During aging humans lose brain dopamine neurons, but there is a regional variability and not all dopamine neurons exhibit vulnerability to neurodegeneration. Microglia are responsible for maintaining tissue homeostasis, neuronal support and protection. However, with aging, microglial cells are known to become senescent and likely lose some of their functional abilities. Since aging is the major risk factor for neurodegenerative diseases, including Parkinson’s disease, we hypothesized that the ratio of microglia to dopaminergic neurons as well as microglial heterogeneity change with aging in the more vulnerable substantia nigra pars compacta (SNc) but not in the ventral tegmental area (VTA). To address this hypothesis, we conducted stereological analyses to measure age-dependent changes in the number of microglia and dopaminergic neurons in the SNc and VTA of 1-, 6-, 9-, 18- and 24- month- old C57BL/J6 male mice. For quantification of the anatomical features of microglia, coronal sections of the midbrain were stained with tyrosine hydroxylase (TH) and Iba1 and performed stereological image analysis. Contrary to our hypothesis, in both brain regions, microglia increased in aged mice, whereas the number of TH+ cells decrease after 1 month. Quantitative morphometric analyses revealed microglial complexity and projection area declined with aging while cell body size increased. Surprisingly, the contact sites between microglia and dopaminergic neurons in both regions increased in aged mice, suggesting an aging-dependent increase in microglial physical support of dopamine neurons. To assess neurotrophic expression of dopaminergic neuron, BDNF and TH mRNA were quantified. Results indicated the ratio of BDNF to TH decreased with aging in the SNc, but not the VTA. Furthermore, to assess gait deficits with aging, ventral plane imaging (DigiGait) was utilized. Gait analysis indicated aging-dependent changes in mice gait indices. In conclusion, increases in microglial cell number, ratio of microglia to dopamine neurons, and physical contact sites suggest these innate biological mechanisms may compensate for the aging-dependent decline of microglia complexity (senescence) for continued neuronal support in aging within the SNc and VTA.